Open GIScience

Joseph Holler's Open GIScience Curriculum at Middlebury College

Reproducible Research Compendia

Oct-19 : In this lesson, we will learn how to enhance reproducibility with a research compendium.

Reading

  1. Nüst, D., and E. Pebesma. 2021. Practical Reproducibility in Geography and Geosciences. Annals of the American Association of Geographers 111 (5):1300–1310. DOI:10.1080/24694452.2020.1806028.

Application

  1. Discuss and study how to use a template for reproducible research

References

  1. Ibanez, L., W. J. Schroeder, and M. D. Hanwell. 2014. Practicing open science. In Implementing Reproducible Research, eds. V. Stodden, F. Leisch, and R. D. Peng, 241–280. Boca Raton: CRC Press.
  2. Millman, K. J., and F. Perez. 2014. Developing Open-Source Scientific Practice. In Implementing Reproducible Research, eds. V. Stodden, F. Leisch, and R. D. Peng, 149–183. Boca Raton: CRC Press.
  3. Nüst, D., C. Boettiger, and B. Marwick. 2018. How to Read a Research Compendium. arXiv:1806.09525.
  4. Wilson, J. P., K. Butler, S. Gao, Y. Hu, W. Li, and D. J. Wright. 2021. A Five-Star Guide for Achieving Replicability and Reproducibility When Working with GIS Software and Algorithms. Annals of the American Association of Geographers 111 (5):1311–1317. DOI:10.1080/24694452.2020.1806026.

Resources

  1. Nüst and others are developing infrastructure for containerized executable compendia at o2r.info/
  2. Docker containers allow researchers to reproduce and share their research processing environments as virtual machines which can be run on a server. www.docker.com/

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