Reproducible Research Compendia
Oct-19
: In this lesson, we will learn how to enhance reproducibility with a research compendium.
Reading
- Nüst, D., and E. Pebesma. 2021. Practical Reproducibility in Geography and Geosciences. Annals of the American Association of Geographers 111 (5):1300–1310. DOI:10.1080/24694452.2020.1806028.
Application
- Discuss and study how to use a template for reproducible research
References
- Ibanez, L., W. J. Schroeder, and M. D. Hanwell. 2014. Practicing open science. In Implementing Reproducible Research, eds. V. Stodden, F. Leisch, and R. D. Peng, 241–280. Boca Raton: CRC Press.
- Millman, K. J., and F. Perez. 2014. Developing Open-Source Scientific Practice. In Implementing Reproducible Research, eds. V. Stodden, F. Leisch, and R. D. Peng, 149–183. Boca Raton: CRC Press.
- Nüst, D., C. Boettiger, and B. Marwick. 2018. How to Read a Research Compendium. arXiv:1806.09525.
- Wilson, J. P., K. Butler, S. Gao, Y. Hu, W. Li, and D. J. Wright. 2021. A Five-Star Guide for Achieving Replicability and Reproducibility When Working with GIS Software and Algorithms. Annals of the American Association of Geographers 111 (5):1311–1317. DOI:10.1080/24694452.2020.1806026.
Resources
- Nüst and others are developing infrastructure for containerized executable compendia at o2r.info/
- Docker containers allow researchers to reproduce and share their research processing environments as virtual machines which can be run on a server. www.docker.com/
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